実家でやる事無いのでscRNAseqからコピー数変異を検出してみたり。 infercnvはなんかインストールできなかったけど、copykatは腫瘍でだけ核型異常検出できてそう。 Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/gkcsOQzeU5
@tangming2005 CopyKAT works well and you don’t need to specify which cells are from the TME https://t.co/wxRCM61R4Z
@LGMartelotto @10xGenomics copyKAT developed in @nicholas_navin lab. benchmark in the paper shows that for 10X, it outperforms inferCNV. we’ve used both tools on 15+ cancer types, and my advice is to try both. also always have a normal reference, inferenc
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
@tangming2005 CopyKat? https://t.co/H9f8TMpZ9J
#NCIHighlights2021: In a @NatureBiotech study, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat, which enables the identification of aneuploid cells and clonal substructure in tumors. https://t.co/7J1leH1Ii1
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
@Ruli_Gao kudos
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
RT @NCICancerBio: In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of an…
In a study supported by our division, @Ruli_Gao, @nicholas_navin, et al. developed CopyKat (copy number karyotyping of aneuploid tumors), which enables the identification of #aneuploid cells and clonal substructure in #tumors @NatureBiotech https://t.co/vj
RT @nresearchnews: A study in @NatureBiotech identifies clonal subpopulations in human tumors from single-cell RNA sequencing data. https:/…
RT @nresearchnews: A study in @NatureBiotech identifies clonal subpopulations in human tumors from single-cell RNA sequencing data. https:/…
RT @BioDecoded: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/3IKmTGUg11 #B…
RT @Ruli_Gao: Glad it is out today at this beginning of a new year! I am very grateful for all the helpful comments from reviewers and edit…
RT @BioDecoded: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/3IKmTGUg11 #B…
❤️❤️❤️
RT @DrDuaneHassane: Copy number and clonal substructure in human tumors as inferred via single-cell transcriptomes https://t.co/ZDU7jmGTJl
Copy number and clonal substructure in human tumors as inferred via single-cell transcriptomes https://t.co/ZDU7jmGTJl
RT @Dr_LeoYu: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology https:…
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology https://t.co/KNJStrhATX
RT @Bartomeu_Colom: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes @NatureBiotech https:/…
RT @ACS_Research: CopyKAT! ACS grantee @nicholas_navin, @Ruli_Gao, and team developed a computational tool to "distinguish normal cell typ…
RT @ACS_Research: CopyKAT! ACS grantee @nicholas_navin, @Ruli_Gao, and team developed a computational tool to "distinguish normal cell typ…
Congrats to @nicholas_navin on the paper!
CopyKAT! ACS grantee @nicholas_navin, @Ruli_Gao, and team developed a computational tool to "distinguish normal cell types in the tumor microenvironment from malignant cells and to resolve clonal substructure within the tumor." https://t.co/FMYT3f09lI h
RT @Bartomeu_Colom: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes @NatureBiotech https:/…
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes @NatureBiotech https://t.co/5o5A0GkoQY
RT @AndresFCardonaZ: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/eILJONN0…
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/eILJONN0gi
#RT A study in NatureBiotech identifies clonal subpopulations in human tumors from single-cell RNA sequencing data. https://t.co/pCXRuphQh2 https://t.co/LFWG3esdDd
RT @Ruli_Gao: Glad it is out today at this beginning of a new year! I am very grateful for all the helpful comments from reviewers and edit…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @Ruli_Gao: Glad it is out today at this beginning of a new year! I am very grateful for all the helpful comments from reviewers and edit…
RT @BioDecoded: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/3IKmTGUg11 #B…
RT @BioDecoded: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/3IKmTGUg11 #B…
RT @BioDecoded: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/3IKmTGUg11 #B…
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/3IKmTGUg11 #Bioinformatics
RT @Ruli_Gao: Glad it is out today at this beginning of a new year! I am very grateful for all the helpful comments from reviewers and edit…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @Ruli_Gao: Glad it is out today at this beginning of a new year! I am very grateful for all the helpful comments from reviewers and edit…
RT @Ruli_Gao: Glad it is out today at this beginning of a new year! I am very grateful for all the helpful comments from reviewers and edit…
RT @NatRevClinOncol: Integrative Bayesian segmentation approach called CopyKAT can estimate genomic copy number profiles at an average reso…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatRevClinOncol: Integrative Bayesian segmentation approach called CopyKAT can estimate genomic copy number profiles at an average reso…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatRevClinOncol: Integrative Bayesian segmentation approach called CopyKAT can estimate genomic copy number profiles at an average reso…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatRevClinOncol: Integrative Bayesian segmentation approach called CopyKAT can estimate genomic copy number profiles at an average reso…
Integrative Bayesian segmentation approach called CopyKAT can estimate genomic copy number profiles at an average resolution of 5 Mb from read depth in high-throughput scRNA-seq data to accurately (98%) distinguish cancer cells from nonmalignant cell types
RT @SeungminHan3: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology https://t.co/YGbTds6NPM
RT @PaperbirdsO: New article: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes. https://t.co…
RT @R_Rahbari: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/1lMBo7TBUz
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @R_Rahbari: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/1lMBo7TBUz
New article: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes. https://t.co/z2qb2ZgX0M #pancreaticcancer #oncology https://t.co/Dawi6yfPPk
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @R_Rahbari: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/1lMBo7TBUz
RT @JustinAPater: Computational biology blows my mind sometimes! 🤯 #SingleCell #ScienceTwitter #Science #AcademicTwitter https://t.co/dwi…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @R_Rahbari: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/1lMBo7TBUz
RT @R_Rahbari: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/1lMBo7TBUz
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @AndresFCardonaZ: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/eILJONN0gi
Fantastic tool to delineate normal vs cancer cells based on aneuploidy* in scRNA-seq: CopyKAT 😺 - so many potential uses (*for applicable cancers) in a clinical setting @NatureBiotech by @nicholas_navin & friends. https://t.co/E58LVWjB1v
RT @Aiims1742: Very interesting work from @Ruli_Gao @nicholas_navin & colleagues (including @TapsiKS @kchenken et al) @MDAndersonNews @Meth…
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @AndresFCardonaZ: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/eILJONN0gi
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @NatureBiotech: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/CGOHj7Gjyv…
RT @LGMartelotto: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes | Nature Biotechnology ht…
RT @AndresFCardonaZ: Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes https://t.co/eILJONN0gi