@Leao_pel @PracheeAC They knew Nature doesn’t always enforce their own rules. See the Seratus paper that stole data from hundreds of people. https://t.co/K8sV57HCGQ
RT @NeuroLuebbert: We used kallisto translated search to align scRNAseq data to the PalmDB, a database of ~300k RdRP amino acid seqs. That’…
We used kallisto translated search to align scRNAseq data to the PalmDB, a database of ~300k RdRP amino acid seqs. That’s a 16,000x increase in the number of viruses that can be detected compared to NCBI reference genome-based detection. https://t.co/Nfa8
RT @thesteinegger: We used the Serratus search to generate the MSAs, which utilizes the AWS cloud and DIAMOND2 (@bbuchfink) to fast align p…
We used the Serratus search to generate the MSAs, which utilizes the AWS cloud and DIAMOND2 (@bbuchfink) to fast align proteins against the SRA. Hits are then assembled into proteins. Thank you @RayanChikhi @RNA_Life for generating the data. ⅖ 📄 https://t.
RT @giorgilab: "Public databases contain a planetary collection of nucleic acid sequences, but their systematic exploration has been inhibi…
👏 @RobertEdgarPhD Chapeau.
"Public databases contain a planetary collection of nucleic acid sequences, but their systematic exploration has been inhibited by a lack of efficient methods for searching this corpus..." Until now. Until... SERRATUS https://t.co/xkqn867RGQ
@Fradbius "The zeta virus circular genomes are highly compressed, ranging from 324 to 789 nt and predicted to fold into rod-like structures. They contain a hhrbz in each orientation and encode two open reading frames (ORFs), one sense and one anti-sense."
@baym this has been done, not as a joke: 15 co-equal authors https://t.co/0ir1GSfP63
RT @IBMCP: #JornadasIBMCP Tras la ponencia de @A_Carbonell_ y la pausa para el café continuamos con Marcos de la Peña @Marcos_dlP Nos habl…
RT @IBMCP: #JornadasIBMCP Tras la ponencia de @A_Carbonell_ y la pausa para el café continuamos con Marcos de la Peña @Marcos_dlP Nos habl…
RT @IBMCP: #JornadasIBMCP Tras la ponencia de @A_Carbonell_ y la pausa para el café continuamos con Marcos de la Peña @Marcos_dlP Nos habl…
RT @IBMCP: #JornadasIBMCP Tras la ponencia de @A_Carbonell_ y la pausa para el café continuamos con Marcos de la Peña @Marcos_dlP Nos habl…
#JornadasIBMCP Tras la ponencia de @A_Carbonell_ y la pausa para el café continuamos con Marcos de la Peña @Marcos_dlP Nos habla del artículo publicado en @Nature : Petabase-scale sequence alignment catalyses viral discovery https://t.co/HFZTDNfR1M https
Serratus did this to find zillions of virus sequences https://t.co/vqjOD1fDMq
@choldgraf Cloud is 🤩🤩 for _some_ computes 🍌: We processed 10.2 petabases of seq data to uncover +130K new RNA viruses (15K known before), took 11 days/$24K credits (https://t.co/dbylCKFOGT) 🍆: Our theoretical AlphaFold2 project, estimate was $3.2M 😿 Tri
See also: https://t.co/4hYqDInjCc "Petabase-scale sequence alignment catalyses viral discovery"
RT @RNA_Life: Our 1' goal is to discover/characterize 100 million RNA viruses by 2030, pushing the limits of both data science and bioinfor…
RT @RNA_Life: Our 1' goal is to discover/characterize 100 million RNA viruses by 2030, pushing the limits of both data science and bioinfor…
RT @RNA_Life: Our 1' goal is to discover/characterize 100 million RNA viruses by 2030, pushing the limits of both data science and bioinfor…
RT @RNA_Life: Our 1' goal is to discover/characterize 100 million RNA viruses by 2030, pushing the limits of both data science and bioinfor…
Our 1' goal is to discover/characterize 100 million RNA viruses by 2030, pushing the limits of both data science and bioinformatics. Building off of https://t.co/dbylCKFOGT If you're a passionate scientist/engineer (postdoc/student/colleague), I'd love to
RT @lpachter: @cshperspectives @neuromusic @drugmonkeyblog @michaelhoffman There are of course many kinds of data, but at least for genomic…
@cshperspectives @neuromusic @drugmonkeyblog @michaelhoffman There are of course many kinds of data, but at least for genomic data one can safely say that all of it has been used. E.g., all data in the SRA has been analyzed, numerous times, in the service
@Jia_Yin_Zhang @EVirusBioinfC @DenisKutnjak This is very much possible. See this study that search for viruses in RNAseq and other metagenomic datasets that found thousands of novel viruses: https://t.co/xXl6y73Rr5
RT @hackseq: Serratus is now published in @Nature :) https://t.co/pWc14xKw16 We searched 5.7M seq libraries (10.2 petabases) for all 15,00…
RT @MGnifyDB: Finally, we are pleased to have helped the authors of https://t.co/4A8BsxVCZM deposit their assemblies in @ENASequence. We wi…
RT @Mike_Drummond_: This is crazy and pretty awesome.
RT @CamilleMrcht: A talk about huge computing resources in genomic projects, the cloud possibilities and their limitations, and an applicat…
A talk about huge computing resources in genomic projects, the cloud possibilities and their limitations, and an application to the Serratus project https://t.co/8WO8Iff0g4
RT @hackseq: Serratus is now published in @Nature :) https://t.co/pWc14xKw16 We searched 5.7M seq libraries (10.2 petabases) for all 15,00…
Finding 130,000 novel #RNA viruses in 11 days is only a first step! Register for next week's #EVBC discussion/perspective on how Computational #Virology is paving the way in understanding Earth's Virome. #bioinformatics https://t.co/pWc14xKw16
RT @PioneerCampus: Thanks to @RayanChikhi for sharing 21st century tools & outcome of a fascinating global Virus-survey👏🏻👍🏻 Curious? https:…
RT @PioneerCampus: Thanks to @RayanChikhi for sharing 21st century tools & outcome of a fascinating global Virus-survey👏🏻👍🏻 Curious? https:…
Thanks to @RayanChikhi for sharing 21st century tools & outcome of a fascinating global Virus-survey👏🏻👍🏻 Curious? https://t.co/ZgdRnSNQkh https://t.co/RmZF2eqAm5
RT @EvolvingVir: Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discove…
RT @EvolvingVir: Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discove…
RT @EvolvingVir: Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discove…
😲🤯
RT @EvolvingVir: Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discove…
RT @EvolvingVir: Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discove…
RT @EvolvingVir: Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discove…
Virosphere diversity, from the sea to open access servers: 1. "Petabase-scale sequence alignment catalyses viral discovery" https://t.co/wO2F5v2IGF
I had missed this one... Amazing: "10^5 novel RNA viruses, thereby expanding the number of known species by roughly an order of magnitude" Congrats to the authors (including @RayanChikhi) https://t.co/7TRQituo0M
What happens when you check for virus DNA in ALL THE SEQUENCES available abroad? You end up discovering *a lot* of new species and increasing the virus database 10 fold. Great collaborative job! 🥳🥳🥳
RT @themicrobeguy: Excited to share our latest collaborative paper out now in @Nature. A story of 15 (!!) joint first au banding together i…
For the reference, the paper is https://t.co/W5TOmaluMR
Original research paper: https://t.co/dPjRAPmeq9
RT @lizworthey: Petabase-scale sequence alignment catalyses viral discovery - Nature https://t.co/2zlEQfWILI
RT @lizworthey: Petabase-scale sequence alignment catalyses viral discovery - Nature https://t.co/2zlEQfWILI
Wow!
Petabase-scale sequence alignment catalyses viral discovery - Nature https://t.co/2zlEQfWILI
RT @Plants_EFSA: Hunting #virus: huge global survey of viral diversity detecting more than 11,000 new plant viruses in addition to almost 7…
@richardneher There's the possibility that some distant CoV are segmented and have undergone (ancient) reassortment. Would this pick up such old events? [1] https://t.co/YeGrEkRd0t [2] https://t.co/pWc14xKw16
RT @CambridgeRNA: Don't miss the return of the RNA club to live, in-person events. Join us this Thursday at 5 pm!
RT @CambridgeRNA: Don't miss the return of the RNA club to live, in-person events. Join us this Thursday at 5 pm!
RT @johnpoverington: Another superb paper - not least for having 15 'first' authors, many of them independent researchers without an affili…
RT @CambridgeRNA: Don't miss the return of the RNA club to live, in-person events. Join us this Thursday at 5 pm!
RT @CambridgeRNA: Don't miss the return of the RNA club to live, in-person events. Join us this Thursday at 5 pm!
RT @CambridgeRNA: Don't miss the return of the RNA club to live, in-person events. Join us this Thursday at 5 pm!
Don't miss the return of the RNA club to live, in-person events. Join us this Thursday at 5 pm!
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…
RT @johnpoverington: Another superb paper - not least for having 15 'first' authors, many of them independent researchers without an affili…
RT @johnpoverington: Another superb paper - not least for having 15 'first' authors, many of them independent researchers without an affili…
RT @johnpoverington: Another superb paper - not least for having 15 'first' authors, many of them independent researchers without an affili…
really amazing work! theres so much to learn from the data we already have
Another superb paper - not least for having 15 'first' authors, many of them independent researchers without an affiliation. Great details on doing data engineering the right way in the supplementary. https://t.co/CeCIfcZYwm
RT @hackseq: Serratus is now published in @Nature :) https://t.co/pWc14xKw16 We searched 5.7M seq libraries (10.2 petabases) for all 15,00…
RT @hackseq: Serratus is now published in @Nature :) https://t.co/pWc14xKw16 We searched 5.7M seq libraries (10.2 petabases) for all 15,00…
@TommyAlain3 @DungHuyHoang1 a few more UTRs to look at. https://t.co/juWbKW7Vtk
RT @themicrobeguy: Excited to share our latest collaborative paper out now in @Nature. A story of 15 (!!) joint first au banding together i…
RT @macroliter: 131,957 novel RNA viruses 🦠. That’s just incredible. Lots of news coverage already but I’m delighted to add to the well de…
New paradigm. Who dis? h/t @MacroLiter
RT @macroliter: 131,957 novel RNA viruses 🦠. That’s just incredible. Lots of news coverage already but I’m delighted to add to the well de…
RT @macroliter: 131,957 novel RNA viruses 🦠. That’s just incredible. Lots of news coverage already but I’m delighted to add to the well de…
RT @macroliter: 131,957 novel RNA viruses 🦠. That’s just incredible. Lots of news coverage already but I’m delighted to add to the well de…
RT @macroliter: 131,957 novel RNA viruses 🦠. That’s just incredible. Lots of news coverage already but I’m delighted to add to the well de…
131,957 novel RNA viruses 🦠. That’s just incredible. Lots of news coverage already but I’m delighted to add to the well deserved attention. #OpenScience Article ➡️ https://t.co/2tq3NASi3e Congrats to the entire team! Senior author’s Twitter handle👇
ウイルス学:ペタ塩基規模のデータベースに潜んでいた多数の新規RNA Nature 2022年2月3日号 https://t.co/Vz9oiHn1mj
Este trabajo es impresionante. Entre otras cosas demuestra lo poco que sabemos sobre la diversidad de los virus y su ecología, los hospedadores y ambientes. Y cuidado, solo usando datos que ya existían! @Marcos_dlP @IBMCP @CSIC https://t.co/YivilWh5yz
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…
An example of reusing data. As discussed on Quirks and Quarks, researchers searched the Sequence Read Archive, where sequence data is deposited for reanalysis, for the presence of new RNA viruses and discovered 130k of them. https://t.co/Gl0TYKyPOQ https
We are back in person next week! Sign up if you are interested
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…
Supercomputers and ML put in good use. Know your "virobiome"(?) https://t.co/ylkW9GIzwG
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…
RT @CambridgeRNA: We are happy to announce the next @CambridgeRNA taking place IN-PERSON at the @GurdonInstitute on the 17th February 5pm G…