11/ Reproducibility of computational workflows is automated using continuous analysis https://t.co/fArPXGoN9E
@frod_san @JosiahParry @rudeboybert @EmilyRiederer Thanks @frod_san! @JosiahParry - here are a couple of papers also worth checking out: 1. https://t.co/NrmUcetX1x 2. https://t.co/l3ivTLZkYw
@arfon Make lightweight continuous analysis easier to implement. https://t.co/NrmUcetX1x E.g., https://t.co/l3ivTLZkYw Actions probably already help but I haven’t full explored them yet.
@michaelhoffman @anthonygitter @dhimmel Man - I wish we'd had their branding people for this @beaulieujones! We could have titled the paper Continuous Machine Learning :) https://t.co/yaZp5cC68Q
RT @LorenaABarba: We extended the notion of reproducible workflows with containers, to the configuration of public cloud environments for d…
RT @LorenaABarba: We extended the notion of reproducible workflows with containers, to the configuration of public cloud environments for d…
RT @LorenaABarba: We extended the notion of reproducible workflows with containers, to the configuration of public cloud environments for d…
We extended the notion of reproducible workflows with containers, to the configuration of public cloud environments for deploying replica HPC environments https://t.co/bHn8pCz5a9 #reproducibility
RT @lpachter: @JaseGehring @NatureBiotech While source code and data sharing is necessary, it is not sufficient. The complexity of current…
This is our new goal! We‘ve released an analysis repository that works with Docker, but being able to run the published analysis without any resource or configuration requirements is substantially better.
@JaseGehring @NatureBiotech While source code and data sharing is necessary, it is not sufficient. The complexity of current experiments requires details of metadata, compute environment, and analysis code to be transparent. There are some innovative solut
@amuellerml @victoriastodden Containers + CI? Challenge is making it easy enough for widespread adoption https://t.co/bwKM28B6qg
RT @frod_san: -Use continuous integration (eg. Travis) to automatically test & update everything (https://t.co/jaw0fSZM1R) -Write reproduc…
-Use continuous integration (eg. Travis) to automatically test & update everything (https://t.co/jaw0fSZM1R) -Write reproducible manuscripts in Rmarkdown https://t.co/Pph9j0O61l -Publish data & code when submitting ms as the latest More good adv
RT @dk_barupal: @MeganRShowalter @Dr_Oli_Jones @CraigWheelock @ESchymanski @WCMC_UCDavis I can happen - if we keep promoting transparent SO…
RT @dk_barupal: @MeganRShowalter @Dr_Oli_Jones @CraigWheelock @ESchymanski @WCMC_UCDavis I can happen - if we keep promoting transparent SO…
@MeganRShowalter @Dr_Oli_Jones @CraigWheelock @ESchymanski @WCMC_UCDavis I can happen - if we keep promoting transparent SOPs (https://t.co/d8qDA8aVUa), publicly available mass spectral libraries (https://t.co/zBElm5Bg09), reproducible data processing work
RT @GreeneScientist: @kirstie_j @GalaCF @CSVConference @turinginst @beaulieujones There is also a manuscript, though it is behind a paywall…
@kirstie_j @GalaCF @CSVConference @turinginst @beaulieujones There is also a manuscript, though it is behind a paywall. It may be easier to work into your scholarly workflows than a blog citation. Thanks! https://t.co/yaZp5cC68Q
Replication, validation and extension of experiments are crucial for #openscience. Reproducibility of computational workflows is automated using continuous analysis https://t.co/gssa8OcNAW https://t.co/CpYM7CbuI7
RT @GreeneScientist: @kirstie_j @stdruskat @beaulieujones @eLifeInnovation @bmpvieira @turinginst Though it's behind a paywall, this was ho…
@kirstie_j @stdruskat @beaulieujones @eLifeInnovation @bmpvieira @turinginst Though it's behind a paywall, this was how our preprint ended up (can't recall if I sent this earlier in the conversation): https://t.co/yaZp5cC68Q
@vsoch @tylerburleigh @earcanal Nifty! You may also enjoy this, which uses CI to automate analysis bits and deploy back to github + archival services https://t.co/yaZp5cC68Q
@zachweinberg super cool paper related to this: https://t.co/buTP23Pa3e Also isn't this theoretically what the "lab in the cloud" companies offer?
@zachweinberg https://t.co/Rlkxo0Dn9E If I recall correctly @beaulieujones covered some handy config changes in this paper (or else it's in the supplement or example repos): https://t.co/yaZp5cC68Q
@rasbt @dyfbrain @nicholashcain As I think about it more, the "data versioning" piece would integrate nicely into a Continuous Analysis strategy. https://t.co/voPqWb2QWe
interesting paper also linked in that thread on same topic https://t.co/81ctRT2vFF
RT @beaulieujones: @doomie Shameless plug: https://t.co/bwKM28B6qg
@serghei_mangul @anshulkundaje @zacharylipton I'm biased, of course, but I like to automate it. Close access paper: https://t.co/yaZp5cC68Q Preprint: https://t.co/9LNsgc50rJ Github: https://t.co/lxgaOjaigz
Reproducable Workflow for Continuous Computational Analysis: https://t.co/Rc5UyBYKDJ https://t.co/cwPl6FaQc2
Reproducibility of computational workflows is automated using continuous analysis https://t.co/5m5JKHA6Pw
Perhaps I should rename @scipipe to "scientific workflow" before publishing it... https://t.co/iTe2l7njmn
With due respect for the work of the authors, but how can reviewers let through a software package named exactly like a generic and tightly topic-related concept like "continuous analysis", causing such confusion - and that in a @NatureBiotech paper?!! htt
Reproducibility of computational workflows is automated using continuous analysis https://t.co/CGH34EYHOL
@gxr @lpachter @biomonika @GTExPortal This is why rerunning the whole analysis pipeline should be as easy as committing to Github: https://t.co/8GX5uW1nTn Ex: https://t.co/8PoTZTWbX1 #ContinuousAnalysis
@puhfu Heard via email: https://t.co/VMvJJQZl4R Thought maybe https://t.co/mnrfrrkHFh or https://t.co/C8jRg6MN6L. Brett had a good year.😀 #ProudPI
Great article showcasing how #tech #research are tackling big issues together #CI #ContinuousAnalysis via @nature https://t.co/7BrAatxrHF
Another name for continuous integration... computational workflows is automated using continuous analysis https://t.co/v07deBd9PZ
RT @CelHern: In case one still has doubts on the existence of the replication problem... https://t.co/QHVE5ozsMA
RT @anthonygitter: @JennyBryan The continuous analysis paper https://t.co/TwPMPJmQfw gives an example of results changing with different so…
In case one still has doubts on the existence of the replication problem... https://t.co/QHVE5ozsMA
RT @anthonygitter: @JennyBryan The continuous analysis paper https://t.co/TwPMPJmQfw gives an example of results changing with different so…
@JennyBryan The continuous analysis paper https://t.co/TwPMPJmQfw gives an example of results changing with different software and metadata versions https://t.co/3RWTA3sk7q
@mikelove @ctitusbrown It's probably clear where we come down on this one, @beaulieujones. 🤣 https://t.co/vSdF1cS8UT
RT @realscientists: If your science uses computing, @cmyeaton wants to hear what you do!👇 We have done some automated end-to-end tests: ht…
If your science uses computing, @cmyeaton wants to hear what you do!👇 We have done some automated end-to-end tests: https://t.co/AQqf58hqqh https://t.co/wWzW26spgS
RT @GreeneScientist: @pjacock @beaulieujones Here's the readcube link #ISMBECCB #BOSC2017 https://t.co/vCJAI4Hcmb
@pjacock @beaulieujones Here's the readcube link #ISMBECCB #BOSC2017 https://t.co/vCJAI4Hcmb
RT @GreeneScientist: #bosc2017 #ismbeccb @beaulieujones presents his work on continuous analysis for automatic #reproducibility. Paper: ht…
RT @GreeneScientist: #bosc2017 #ismbeccb @beaulieujones presents his work on continuous analysis for automatic #reproducibility. Paper: ht…
Reproducibility of computational workflows is automated using continuous analysis https://t.co/QM4gbIC9QA
RT @GreeneScientist: #bosc2017 #ismbeccb @beaulieujones presents his work on continuous analysis for automatic #reproducibility. Paper: ht…
RT @GreeneScientist: #bosc2017 #ismbeccb @beaulieujones presents his work on continuous analysis for automatic #reproducibility. Paper: ht…
#bosc2017 #ismbeccb @beaulieujones presents his work on continuous analysis for automatic #reproducibility. Paper: https://t.co/GsswsefLzv
@mcxfrank We saw the same thing in computational biology - Continuous integration is also helpful https://t.co/WbSpINMjcZ
RT @GreeneScientist: @MatteoVdOC @nomad421 I'd also suggest using a staging branch to determine exactly which commits you want to run over:…
@MatteoVdOC @nomad421 I'd also suggest using a staging branch to determine exactly which commits you want to run over: https://t.co/GsswsefLzv
RT @michaelhoffman: The future is now. Automated computational reproducibility thru continuous analysis @beaulieujones @GreeneScientist htt…
RT @biorxiv_pubd: Reproducible Computational Workflows with Continuous Analysis published as: https://t.co/SZEr0gGH2w @NatureBiotech #biorx…
RT @biorxiv_pubd: Reproducible Computational Workflows with Continuous Analysis published as: https://t.co/SZEr0gGH2w @NatureBiotech #biorx…
Reproducible Computational Workflows with Continuous Analysis published as: https://t.co/SZEr0gGH2w @NatureBiotech #biorxiv
RT @GreeneScientist: 👇👇 Great thread! @beaulieujones highlights his topical paper: https://t.co/GsswsefLzv & we wrote review via PRs: https…
RT @GreeneScientist: 👇👇 Great thread! @beaulieujones highlights his topical paper: https://t.co/GsswsefLzv & we wrote review via PRs: https…
RT @GreeneScientist: 👇👇 Great thread! @beaulieujones highlights his topical paper: https://t.co/GsswsefLzv & we wrote review via PRs: https…
RT @GreeneScientist: 👇👇 Great thread! @beaulieujones highlights his topical paper: https://t.co/GsswsefLzv & we wrote review via PRs: https…
👇👇 Great thread! @beaulieujones highlights his topical paper: https://t.co/GsswsefLzv & we wrote review via PRs: https://t.co/qbkXaSb4R9 https://t.co/M2IASXoBAt
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
Top @RNomics #tweeted story: Reproducibility of computational workflows is auto… https://t.co/brEUJgGl2H, see more https://t.co/mx2YzvfCax
Top #tweeted story in #bioinformatics: Reproducibility of computational workflo… https://t.co/brEUJgGl2H, see more https://t.co/x4TiUjeQ4E
CT @rnomics/bioscience Reproducibility of computational workflows is automated using continuous analysis : Nature… https://t.co/mMHHud86eg
mt #bioinformatics #bioit Reproducibility of computational workflows is automat… https://t.co/w0T5v2mMvA, see more https://t.co/X2bD5F4Rqm
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @moorejh: Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
Reproducibility of computational workflows https://t.co/z0ptwas5Vi #bioinformatics #datascience HT @GreeneScientist
RT @NatureBiotech: #Reproducibility of computational workflows is automated using continuous analysis https://t.co/3XuXkPetMx https://t.co/…
Reproducibility of computational workflows is automated using continuous analysis https://t.co/VxIqPkSL8G
RT @beaulieujones: Automatic reproducibility for computational analyses by continuous analysis w/ @GreeneScientist (via @NatureBiotech) htt…
Reproducibility of computational workflows is automated using continuous analysis https://t.co/5tLLNd3Knh
Reproducibility of computational workflows is automated using continuous analysis null https://t.co/NXh544Ja0A #DTHSTR
Reproducibility of computational workflows is automated using continuous analysis https://t.co/Lx28nhVley
Reproducibility of computational workflows is automated using continuous analysis https://t.co/8XYsLM3Awm
@beaulieujones @LonelyJoeParker @SoftwareSaved Not perfect, but readcube link also available: https://t.co/vCJAI4Hcmb
Ironic: great-looking #reproducible science article by @beaulieujones @GreeneScientist behind paywall https://t.co/XEFMSgfhU9 @SoftwareSaved
RT @BioNagoya: Reproducibility of computational workflows is automated using continuous analysis. https://t.co/oEtKuI0j8e
RT @BioNagoya: Reproducibility of computational workflows is automated using continuous analysis. https://t.co/oEtKuI0j8e
RT @pfanderson: Reproducibility of computational #workflows is automated using continuous analysis https://t.co/tjhQvrNgWb @csfriedman @war…
Reproducibility of computational #workflows is automated using continuous analysis https://t.co/tjhQvrNgWb @csfriedman @wareFLO
RT @BioNagoya: Reproducibility of computational workflows is automated using continuous analysis. https://t.co/oEtKuI0j8e
RT @BioNagoya: Reproducibility of computational workflows is automated using continuous analysis. https://t.co/oEtKuI0j8e
Reproducibility of computational workflows is automated using continuous analysis https://t.co/QuXR3iE5Eh